PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1962

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 259aa MW: 31618.9 Da PI: 9.1428

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1962	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.3	2.4e-24	35	118	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k+lWe +s +++e+g++rs++qCk+kw+nl +ryk ++ e++ ++++++p++++l+ Gh_A01G1962 35 QWSIQETKEFLMIRAELDTNFMETKRNKQLWEFISTRLKEKGYNRSAEQCKCKWKNLVTRYKGCEMVEEEA--KRQQQFPFYNDLQ 118 7******************************************************************95..66678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.08E-20	34	99	No hit	No description
Pfam	PF13837	6.0E-20	35	120	No hit	No description
PROSITE profile	PS50090	7.515	36	92	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEGLHHHQYY HRQHHQQQHQ QQAMNVNVDV DRLPQWSIQE TKEFLMIRAE LDTNFMETKR 60 NKQLWEFIST RLKEKGYNRS AEQCKCKWKN LVTRYKGCEM VEEEAKRQQQ FPFYNDLQAI 120 FSARKQTTLK KLCSDKEEDK GRYRGKEKGK KGVSISGSTS ESINDGNDIK EILKCFMRQQ 180 MEMEIQWREA LEERENERRL KEMEWRRTME ALENERVMMD IRWREKEEQR RIREEARSER 240 IDALVTTLLN KLTRDDHKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468500.1	1e-167	PREDICTED: trihelix transcription factor GT-3b-like
Swissprot	O80450	4e-56	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A0D2RCJ6	1e-167	A0A0D2RCJ6_G
STRING	POPTR_0006s10240.1	4e-85	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-48	Trihelix family protein